Draft Genome Sequence of Chryseobacterium sp. Strain GSE06, a Biocontrol Endophytic Bacterium Isolated from Cucumber (Cucumis sativus).
Identifieur interne : 000C63 ( Main/Exploration ); précédent : 000C62; suivant : 000C64Draft Genome Sequence of Chryseobacterium sp. Strain GSE06, a Biocontrol Endophytic Bacterium Isolated from Cucumber (Cucumis sativus).
Auteurs : Jin-Ju Jeong [Corée du Sud] ; Byeong Hyeok Park [Corée du Sud] ; Hongjae Park [Corée du Sud] ; In-Geol Choi [Corée du Sud] ; Ki Deok Kim [Corée du Sud]Source :
- Genome announcements [ 2169-8287 ] ; 2016.
Abstract
Chryseobacterium sp. strain GSE06 is a biocontrol endophytic bacterium against the destructive soilborne oomycete Phytophthora capsici, which causes Phytophthora blight of pepper. Here, we present its draft genome sequence, which contains genes related to biocontrol traits, such as colonization, antimicrobial activity, plant growth promotion, and abiotic or biotic stress adaptation.
DOI: 10.1128/genomeA.00577-16
PubMed: 27313310
PubMed Central: PMC4911489
Affiliations:
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Strain GSE06, a Biocontrol Endophytic Bacterium Isolated from Cucumber (Cucumis sativus).</title><author><name sortKey="Jeong, Jin Ju" sort="Jeong, Jin Ju" uniqKey="Jeong J" first="Jin-Ju" last="Jeong">Jin-Ju Jeong</name><affiliation wicri:level="3"><nlm:affiliation>Laboratory of Plant Disease and Biocontrol, College of Life Sciences and Biotechnology, Korea University, Seoul, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Laboratory of Plant Disease and Biocontrol, College of Life Sciences and Biotechnology, Korea University, Seoul</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName></affiliation></author><author><name sortKey="Park, Byeong Hyeok" sort="Park, Byeong Hyeok" uniqKey="Park B" first="Byeong Hyeok" last="Park">Byeong Hyeok Park</name><affiliation wicri:level="3"><nlm:affiliation>Department of Biotechnology, Korea University, Seoul, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Biotechnology, Korea University, Seoul</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName></affiliation></author><author><name sortKey="Park, Hongjae" sort="Park, Hongjae" uniqKey="Park H" first="Hongjae" last="Park">Hongjae Park</name><affiliation wicri:level="3"><nlm:affiliation>Department of Biotechnology, Korea University, Seoul, Republic of Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Biotechnology, Korea University, Seoul</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName></affiliation></author><author><name sortKey="Choi, In Geol" sort="Choi, In Geol" uniqKey="Choi I" first="In-Geol" last="Choi">In-Geol Choi</name><affiliation wicri:level="3"><nlm:affiliation>Department of Biotechnology, Korea University, Seoul, Republic of Korea igchoi@korea.ac.kr kidkim@korea.ac.kr.</nlm:affiliation><country wicri:rule="url">Corée du Sud</country><wicri:regionArea>Department of Biotechnology, Korea University, Seoul</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName></affiliation></author><author><name sortKey="Kim, Ki Deok" sort="Kim, Ki Deok" uniqKey="Kim K" first="Ki Deok" last="Kim">Ki Deok Kim</name><affiliation wicri:level="3"><nlm:affiliation>Laboratory of Plant Disease and Biocontrol, College of Life Sciences and Biotechnology, Korea University, Seoul, Republic of Korea igchoi@korea.ac.kr kidkim@korea.ac.kr.</nlm:affiliation><country wicri:rule="url">Corée du Sud</country><wicri:regionArea>Laboratory of Plant Disease and Biocontrol, College of Life Sciences and Biotechnology, Korea University, Seoul</wicri:regionArea><placeName><settlement type="city">Séoul</settlement><region type="capital">Région capitale de Séoul</region></placeName></affiliation></author></analytic><series><title level="j">Genome announcements</title><idno type="ISSN">2169-8287</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Chryseobacterium sp. strain GSE06 is a biocontrol endophytic bacterium against the destructive soilborne oomycete Phytophthora capsici, which causes Phytophthora blight of pepper. 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Here, we present its draft genome sequence, which contains genes related to biocontrol traits, such as colonization, antimicrobial activity, plant growth promotion, and abiotic or biotic stress adaptation. </AbstractText><CopyrightInformation>Copyright © 2016 Jeong et al.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jeong</LastName><ForeName>Jin-Ju</ForeName><Initials>JJ</Initials><AffiliationInfo><Affiliation>Laboratory of Plant Disease and Biocontrol, College of Life Sciences and Biotechnology, Korea University, Seoul, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Park</LastName><ForeName>Byeong Hyeok</ForeName><Initials>BH</Initials><AffiliationInfo><Affiliation>Department of Biotechnology, Korea University, Seoul, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author 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Evol Microbiol. 2003 Jan;53(Pt 1):93-7</Citation><ArticleIdList><ArticleId IdType="pubmed">12656158</ArticleId></ArticleIdList></Reference><Reference><Citation>Int J Syst Evol Microbiol. 2010 Aug;60(Pt 8):1876-80</Citation><ArticleIdList><ArticleId IdType="pubmed">19767354</ArticleId></ArticleIdList></Reference><Reference><Citation>Int J Syst Evol Microbiol. 2013 Aug;63(Pt 8):2835-40</Citation><ArticleIdList><ArticleId IdType="pubmed">23315413</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Pharm Res. 2004 Nov;27(11):1081-5</Citation><ArticleIdList><ArticleId IdType="pubmed">15595406</ArticleId></ArticleIdList></Reference><Reference><Citation>Int J Syst Evol Microbiol. 2005 Jan;55(Pt 1):423-6</Citation><ArticleIdList><ArticleId IdType="pubmed">15653912</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Announc. 2016 Apr 21;4(2):null</Citation><ArticleIdList><ArticleId IdType="pubmed">27103726</ArticleId></ArticleIdList></Reference><Reference><Citation>Int J Syst Evol Microbiol. 2014 Apr;64(Pt 4):1419-27</Citation><ArticleIdList><ArticleId IdType="pubmed">24449786</ArticleId></ArticleIdList></Reference><Reference><Citation>Phytopathology. 2010 Aug;100(8):774-83</Citation><ArticleIdList><ArticleId IdType="pubmed">20626281</ArticleId></ArticleIdList></Reference><Reference><Citation>J Comput Biol. 2012 May;19(5):455-77</Citation><ArticleIdList><ArticleId IdType="pubmed">22506599</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Corée du Sud</li></country><region><li>Région capitale de Séoul</li></region><settlement><li>Séoul</li></settlement></list><tree><country name="Corée du Sud"><region name="Région capitale de Séoul"><name sortKey="Jeong, Jin Ju" sort="Jeong, Jin Ju" uniqKey="Jeong J" first="Jin-Ju" last="Jeong">Jin-Ju Jeong</name></region><name sortKey="Choi, In Geol" sort="Choi, In Geol" uniqKey="Choi I" first="In-Geol" last="Choi">In-Geol Choi</name><name sortKey="Kim, Ki Deok" sort="Kim, Ki Deok" uniqKey="Kim K" first="Ki Deok" last="Kim">Ki Deok Kim</name><name sortKey="Park, Byeong Hyeok" sort="Park, Byeong Hyeok" uniqKey="Park B" first="Byeong Hyeok" last="Park">Byeong Hyeok Park</name><name sortKey="Park, Hongjae" sort="Park, Hongjae" uniqKey="Park H" first="Hongjae" last="Park">Hongjae Park</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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